CLUSTAL FORMAT for T-COFFEE Version_5.05 [http://www.tcoffee.org], CPU=0.31 sec, SCORE=90, Nseq=2, Len=566 

Brisbane_2008_HA     MKVKLLVLLCTFTATYADTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLENSHNGKLCL
California_SWINE_HA  MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCK
                     **. *:*** **::: ***:*******************************:.****** 

Brisbane_2008_HA     LKGIAPLQLGNCSVAGWILGNPECELLISKESWSYIVEKPNPENGTCYPGHFADYEELRE
California_SWINE_HA  LRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETPSSDNGTCYPGDFIDYEELRE
                     *:*:***:**:*.:*********** * : .*******.*..:*******.* *******

Brisbane_2008_HA     QLSSVSSFERFEIFPKESSWPNH-TVTGVSASCSHNGESSFYRNLLWLTGKNGLYPNLSK
California_SWINE_HA  QLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSK
                     **************** ****** : .**:*:*.* * .***:**:**. *.. **:***

Brisbane_2008_HA     SYANNKEKEVLVLWGVHHPPNIGDQKALYHTENAYVSVVSSHYSRKFTPEIAKRPKVRDQ
California_SWINE_HA  SYINDKGKEVLVLWGIHHPSTSADQQSLYQNADTYVFVGSSRYSKKFKPEIAIRPKVRDQ
                     ** *:* ********:***.. .**::**:. ::** * **:**:**.**** *******

Brisbane_2008_HA     EGRINYYWTLLEPGDTIIFEANGNLIAPRYAFALSRGFGSGIINSNAPMDKCDAKCQTPQ
California_SWINE_HA  EGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPK
                     ***:******:****.* ***.***:.******:.*. ***** *::*:..*::.****:

Brisbane_2008_HA     GAINSSLPFQNVHPVTIGECPKYVRSAKLRMVTGLRNIPSIQSRGLFGAIAGFIEGGWTG
California_SWINE_HA  GAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAIAGFIEGGWTG
                     ****:******:**:***:*****:*:***:.****************************

Brisbane_2008_HA     MVDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLERR
California_SWINE_HA  MVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKR
                     ********************* *******: ************************:**:*

Brisbane_2008_HA     MENLNKKVDDGFIDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNG
California_SWINE_HA  IENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNG
                     :***********:********************:************:*************

Brisbane_2008_HA     CFEFYHKCNDECMESVKNGTYDYPKYSEESKLNREKIDGVKLESMGVYQILAIYSTVASS
California_SWINE_HA  CFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASS
                     ********:: ******************:*****:********  :*************

Brisbane_2008_HA     LVLLVSLGAISFWMCSNGSLQCRICI
California_SWINE_HA  LVLVVSLGAISFWMCSNGSLQCRICI
                     ***:**********************